PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g002120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 515aa    MW: 55332.3 Da    PI: 9.5873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g002120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-0584106123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  C+k F r  nL+ H r H
  Csa06g002120.1  84 FICDVCNKGFQREQNLQLHRRGH 106
                     89*******************88 PP

2zf-C2H213.30.00024160182123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  Csa06g002120.1 160 WKCEKCSKRYAVQSDWKAHSKTC 182
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.4E-583106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-783106No hitNo description
PROSITE profilePS5015710.92884106IPR007087Zinc finger, C2H2
SMARTSM003550.006184106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355110125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-5148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-7155180No hitNo description
SMARTSM00355130160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MSSSSYNTSV IPSSSSSAQP FFITSSGAGD NDFNRKNTFM SSMIQQPNSS APPPKKRRNQ  60
PGNPNPDAEV VALSPKTLMA TNRFICDVCN KGFQREQNLQ LHRRGHNLPW KLKQKSTKEV  120
KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH YYRKHGEKKW KCEKCSKRYA VQSDWKAHSK  180
TCGTKEYRCD CGTIFSRRDS YITHRAFCDA LIQETARNPA VSFTSMAASS SGAGSGGIYG  240
RLGGASALSH HHMSGHPSSG FPPLAGYNLN IASSENRRDF VPQSSNPNFL LQCSSSQGML  300
TTTPNNNDQS FMNQHGLIQF DPVDNINIKS SSTNNSFFNL GFFQENTKNS ETSLPSLYST  360
DVLVQHREEN LNAGSNVSAT ALLQKATQMG SVTSNDSALF RGLASSSNPS SVIGNHFGGG  420
QILENDNGNL QGLMNSFAAV NGGSGGSGGN IFDVHFGNNG NMSGSDKLTL DFLGVGGMVR  480
NVNRGGGGGG SSRGGVSLDG EAKFPEQNHP FGRG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1177330.0AK117733.1 Arabidopsis thaliana At2g02080 mRNA for putative C2H2-type zinc finger protein, complete cds, clone: RAFL17-41-L01.
GenBankBT0058970.0BT005897.1 Arabidopsis thaliana At2g02080 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513966.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_010513967.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_010513968.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ8GYC10.0IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLR0HIV80.0R0HIV8_9BRAS; Uncharacterized protein
STRINGAT2G02080.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.10.0indeterminate(ID)-domain 4